Program

Tentative program:
Friday, 3 May, 2013

9:30 - Martin Vingron : BREW introduction

11:00 First session (Gene regulation)

11:00-11:20 - Ksenia Lavrichenko : Network-level conservation of microRNA targeting

11:30-11:50 - Johannes Helmuth : Regulation at the transition from transcription initiation to elongation of ubiquitous CpG-enriched promoters

12:00 - Lunch

1:00 - Second session (NGS)

1:00-1:20 - Kai Bernd Stadermann : Integration of differential expression analysis capabilities into a Viewer for Next Generation Sequencing Data utilizing baySeq, DESeq and an own approach

1:30-1:50 - Linda K. Sundermann : ChimP: Chimera Prediction with Jumping Alignments

2:00 - Coffee break

3:00 - Guest talks

3:00-3:45 - Navodit Misra : Pruning trees

3:45-4:30 - Peter Arndt : Breaking sticks

4:30 - Tour of Berlin center

6:00 - Dinner

8:00 - Scientific discussion: Future of Bioinformatics

Saturday, 4 May, 2013

9:30 - Matt Huska : Approximate Learning Algorithms Applied to the Disregulation of Circadian Rhythm through EtOH Perturbation Experiments

10:00 - Coffee break

10:30 - Third session (Systems biology I)

10:30-10:50 - Fedor Kazantsev : MGSmodelsDB - a new database on mathematical models of biomolecular systems

11:00-11:20 - Dmytro Fishman : Fast detection of correlated pairs using nearest neighbor indexing

11:30-11:50 - Mikhail Shubin : Decomposing the Bacterial Phenotypic Time-series into biologically-meaningful components

12:00 - Lunch

1:00 - Fourth session (Systems biology II)

1:00-1:20 - Petr M. Ponomarenko : Significant correlation between Pearson's variation coefficient of genes expression in vivo and the affinity rates in silico of the TATA-binding protein (TBP) to the gene promoters

1:30-1:50 - Christolph Brinkrolf : VANESA - Petri nets and their Application to Systems Biology

2:00 - Coffee break

2:30 - Fifth session (Systems biology III & Molecular dynamics)

2:30-2:50 - Kirsten Thobe : Discrete Modeling of the MAPK-mTor Pathway Connection in Cancer

3:00-3:20 - Andrey Akinshin : Mathematical and computational models of gene networks functioning

3:30-3:50 - Han Cheng Lie : Breaking the curse of dimensionality for conformational analysis

4:00 - Discussion and tour

6:00 - Dinner

8:00 - Scientific discussion: Future of personalized medicine