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Computational Services and Software
Computational Services
- CORG - COmparative Regulatory Genomics
- GeneNest - EST Clustering
- GHMM - The General Hidden Markov Model library
- Logos for Sequences, Profiles, and HMMs
- MCPD - Markov Chain Pooling Decoder
- Multiple Sequence Alignment Page (Web-Interfaces to MSA Programs at CMB)
- PRIDE - Primer Designi
- spliceNest - Visualizing Splicing of Genes from EST Data
- SVC (Structured Visualization of Evolutionary Conserved Sequences)
- T-Reg Comparator - Comparison of Position Weight Matrices
Software
- GQL: The Graphical Query Language: A GHMM-based tool for querying and clustering Gene-Expression time-course data
- HMMEd: Hidden Markov Model Editor
- JAli - Database Search using Jumping Alignments
- ProMide: Probe selection and Microarray Design
- TREE-PUZZLE - ML phylogenetic analysis (in collaboration with A. v. Haeseler and K. Strimmer)